Current research topics
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Redox chemical biology
We are interested in creating probes to measure and control the concentration of redox-active molecules in prokaryotic and eukaryotic cells. We combine small organic molecules and protein-based probes to achieve chemical specificity and subcellular precision.
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Imaging tools
We are developing small-molecule and protein-based tools to enable live-cell imaging with super-resolution and minimal disturbance of the specimen. We are particularly interested in developing new small labels, robust sensors, and red-shifted fluorophores.
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Single-molecule proteomics
We are developing optical methods to identify peptides and proteins with single-molecule sensitivity. We use spontaneously blinking fluorophores to label peptides and proteins. We analyze their single-molecule fluorescence traces using deep learning.
ERC-funded research
ERC-funded publications:
Fluorogenic Polymethine Dyes by Intramolecular Cyclization.
A. Martin, P. Rivera-Fuentes, Curr. Op. Chem. Biol. 2024, 80, 102444.
A General Strategy to Develop Fluorogenic Polymethine Dyes for Bioimaging.
A. Martin, P. Rivera-Fuentes, Nat. Chem. 2024, 16, 28.
Multivalent Peptide Ligands To Probe the Chromocenter Microenvironment in Living Cells.
N. Guidotti, A. Eördögh, M. Mivelaz, P. Rivera-Fuentes, B. Fierz, ACS Chem. Biol. 2023, 18, 1066.
Single-Molecule Peptide Identification Using Fluorescence Blinking Fingerprints.
S. Püntener, P. Rivera-Fuentes, J. Am. Chem. Soc. 2023, 145, 1441.
A. Eördögh, A. Martin, P. Rivera-Fuentes, Chem. Eur. J. 2022, 28, e202202832.
Dual-Activatable Cell Tracker for Controlled and Prolonged Single-Cell Labeling.
E. A. Halabi, J. Arasa, S. Püntener, V. Collado-Diaz, C. Halin, P. Rivera-Fuentes, ACS Chem. Biol. 2020, 15, 1613.
Genetically Encoded Activators of Small Molecules for Imaging and Drug Delivery.
Z. Thiel, J. Nguyen, P. Rivera-Fuentes, Angew. Chem. Int. Ed. 2020, 59, 7669.